Urinary Tract Infections

Urinary Tract Infection (UTI)

Patient Population:
Adult
DiagnosisCommon PathogensDrug(s) of First ChoiceAlternative Drug(s)CommentsExpected Duration 
Acute prostatitis 

Enterobacteriaceae (E. coli)

N. gonorrhoeae

C. trachomatis

Ciprofloxacin

OR 

Trimethoprim/

sulfamethoxazole

If high risk for sexually transmitted infection, refer to link below:

/content/sexually-transmitted-infections

 

Antibiotic penetration in the acute inflammatory state is adequate for most antibiotics

Test for N. gonorrhoeae and C. trachomatis in sexually active patients and treat as indicated

2-4 weeks

Cultures should be obtained and definitive therapy should be based on sensitivities

 
Chronic prostatitis Enterobacterales spp (E. coli)

Ciprofloxacin 

OR 

Trimethoprim/

sulfamethoxazole

 

Few drugs penetrate non-inflamed prostate

Fluoroquinolones and trimethoprim/sulfamethoxazole adequately penetrate in non-inflamed state

Test for N. gonorrhoeae and C. trachomatis in sexually active patients

Consider urologic evaluation

*Cultures should be obtained and definitive therapy should be based on sensitivities.

6-8 weeks 
Asymptomatic bacteriuria 

Enterobacterales spp

Enterococcus spp

No antibiotic treatment required, replace or remove urinary catheter 

Pyuria, foul smelling or cloudy urine alone are not indications for treatment

Exceptions: pregnant women, patients having traumatic urologic procedures, ANC < 500, recent renal transplant (3 months)

0 days 
Catheter-associated candiduriaCandida sppTreatment not generally required Pyuria is not an indication for treatment0 days 
Community-acquired pyelonephritis/complicated UTI, hospitalized patient Enterobacterales spp (e.g. E. coli, Proteus)

Ceftriaxone

OR

Ertapenem 

(if most recent microbiology suggesting resistance or for hemodynamically unstable patients)

For severe beta-lactam allergy:

Aztreonam

Switch to oral therapy when susceptibilities known and patient stable

Consider prostatitis in males with UTI and fever

7 days 
Community-acquired pyelonephritis/complicated UTI, outpatient 

Enterobacterales spp (E. coli)

Enterococcus spp

Ceftriaxone X 1 dose 

Followed by 

TMP/SMX (trimethoprim/sulfamethoxazole) 

OR

Ciprofloxacin (preferred as monotherapy if ceftriaxone not available)

Ceftriaxone X 1 dose

Followed by one of the agents below:

Trimethoprim/Sulfamethoxazole 

OR 

oral β-lactam (amoxicillin/clavulanate, cefuroxime, cefpodoxime)

Trimethoprim-sulfamethoxazole is preferred if organism is susceptible

 

Consider prostatitis in males with UTI and fever

Urinalysis and urine culture should be performed and therapy adjusted based on culture and sensitivity

7 days

 

 
Healthcare onset UTI (including catheter associated)

Enterobacterales spp (e.g. E. coli, Proteus)

P. aeruginosa (less common)

Piperacillin/
Tazobactam

OR

Ertapenem (if most recent microbiology suggesting resistance or  if hemodynamically unstable)

 

For severe PCN allergy:
Aztreonam
 

Criteria: signs and symptoms compatible with a UTI, no other identified source of infection, & ≥ 100,000 cfu of  ≥ 1 bacterial species on urine culture

Pyuria alone is not an indication for treatment.

A negative urinalysis suggests an alternative source of infection

Remove catheter if possible.

Switch to oral therapy when susceptibilities known and patient stable

Consider prostatitis in males with UTI and fever

7 days  
Uncomplicated Cystitis, Women 

Enterobacterales spp (E. coli)

Staph. saprophyticus (Coagulase negative staphylococcus) (4%)

Nitrofurantoin 100 mg PO BID x 5 days (avoid if CrCl < 30 mL/min)

Cephalexin 500 mg PO BID x 5-7 days

Reserve for patients at highest risk of failure (selection for resistant isolates):

Ciprofloxacin 500mg PO q12h x 3 days

Fosfomycin 

Trimethoprim/ Sulfamethoxazole 1 DS PO BID x 3 days (if no previous antibiotic therapy)

Asymptomatic bacteriuria and/or pyuria are not indications for treatment

Exceptions: pregnant women, patients having traumatic urologic procedures, ANC < 500, recent renal transplant (3 months)

IDSA guidelines state Trimethoprim/ Sulfamethoxazole is appropriate if resistance rates do not exceed 20%

In patients with recurrent UTIs, review recent microbiology to help determine empirical therapy

3-7 days depending on antibiotic chosen 

Urinary Tract Infections - Hospital Onset

Patient Population:
Pediatric

Diagnosis is made based on: 

Pyuria (>5-10 WBC/HPF on microscopy) AND 

At least 50,000 colonies per mL of a single uropathogenic organism in an appropriately collected specimen: 

Catheterized (even if bag collection for urinalysis is used for screening, catheterization should be used to collect urine for culture) 

Clean catch  

Compatible urinary tract symptoms 

Therapy should be modified according to culture and susceptibilities.  For patients with prior UTIs, consider susceptibilities of prior causative organisms when selecting empiric therapy. See Table 1 for inferred susceptibility for enteral antibiotics from IV antibiotic susceptibilities that are routinely reported in BCH Microbiology laboratories. Consider ID/ASP consult for patients with current or recent history of multidrug resistant organisms, such as Extended-Spectrum Beta-lactamase (ESBL) producers.  

Condition Major Pathogens  First Choice Therapy Alternative Therapy Comments

Urinary tract infection, hospital-onset 

This category is intended for catheter-associated infection, or patients with significant prior antibiotic exposure - for patients at low-risk for antibiotic-resistant organisms, refer to Community-Onset UTI section 

Enteric and hospital-acquired gram-negative bacteria including Pseudomonas aeruginosa 

If the patient has an indwelling urinary catheter
or performs clean intermittent catheterization, Enterococcus species and Candida species are more likely to
represent colonization. May consider catheter exchange, continue clean intermittent catheterization every 3 hours or as guided by Urology recommendations

Ceftazidime
50 mg/kg/dose (max 2000 mg/dose) IV q8h  

Cephalosporin allergy with lower risk for allergic reaction (full dose vs. test dose per Inpatient Beta-Lactam Allergy Guideline)

Piperacillin-tazobactam (Zosyn)
100 mg piperacillin/kg/dose (max 4000 mg  piperacillin/dose) IV q6h  


Penicillin or cephalosporin allergy with higher risk for allergic reaction

Ciprofloxacin
10 mg/kg/dose (max 400 mg/dose) IV q8h  

OR  

Ciprofloxacin 15 mg/kg/dose (max 500 mg/dose) enterally bid 

Duration: 7 days for most patients, individualized per ID consult guidance for patients with significant complications 

Consider Urology consult if patient has genitourinary abnormalities 

Modify therapy based on culture and susceptibility. Change to enteral therapy based on clinical improvement, organism isolated, ability to tolerate enteral therapy. See Table 1, 2 and 3 below for guidance 

Table 1: IV to enteral inferred susceptibility 
Ampicillin → amoxicillin (cannot infer susceptibility to cephalosporins) 
Ampicillin-sulbactam (Unasyn) → amoxicillin/clavulanate (Augmentin) 
Cefazolin MIC <=16 → cephalexin/cefuroxime/cefdinir (cephalexin preferred) 
Ceftazidime/Ceftriaxone → N/A (cannot infer susceptibility to 3rd generation oral cephalosporins)
Ciprofloxacin → ciprofloxacin 
Trimethoprim-sulfamethoxazole → trimethoprim-sulfamethoxazole (Bactrim or Septra) 
Table 2: Preferred enteral antibiotics for definitive therapy 
If the patient is able to take enteral therapy and the bacteria is susceptible, recommend narrowing antimicrobial coverage (the following antibiotics are in order of preferential use top to bottom): 
1st Tier

Amoxicillin 25 mg/kg/dose (max 500 mg/dose) enterally bid 

OR 

Cephalexin 25 mg/kg/dose (max 500 mg/dose) enterally tid  

2nd Tier

Trimethoprim-sulfamethoxazole (Bactrim or Septra) 5 mg trimethoprim/kg/dose (max 160mg trimethoprim/dose) enterally bid  

OR  

Nitrofurantoin monohydrate/macrocrystals (only use in cystitis without pyelonephritis) 100 mg/dose enterally bid 

3rd Tier 

Amoxicillin/clavulanate (Augmentin) 25 mg amoxicillin /kg/dose (max 500 mg amoxicillin/dose) enterally bid 

Exception: ESBL-producing organism, contact ASP for guidance.

4th Tier                            Ciprofloxacin 15 mg/kg/dose (max 500 mg/dose) enterally bid 
Table 3: Preferred IV antibiotics for definitive therapy 
IF the patient still needs IV therapy and the bacteria is susceptible, recommend narrowing antimicrobial coverage (the following antibiotics are in order of preferential use top to bottom): 
1st Tier

Ampicillin 50 mg/kg/dose (max 2000 mg/dose) IV q6h 

OR 

Cefazolin 25 mg/kg/dose (max 2000 mg/dose) IV q8h 

2nd Tier

Ampicillin-sulbactam (Unasyn) 50 mg ampicillin/kg/dose (max 2000 mg ampicillin/dose) IV q6h 

Exception: ESBL-producing organism, contact ASP for guidance.

OR 

Ceftriaxone 50 mg/kg/dose (max 1000 mg/dose) IV q24h 

OR 

Trimethoprim-sulfamethoxazole (Bactrim or Septra) 5 mg trimethoprim/kg/dose (max 160 mg trimethoprim/dose) IV q12h  

3rd Tier  Ciprofloxacin 10 mg/kg/dose (max 400 mg/dose) IV q8h  
4th Tier                            Gentamicin 5 mg/kg/dose IV q24h 

References: 

CLSI supplement M100. Wayne, PA: Clinical and Laboratory Standards Institute; 2020. 

Fox, M. T., Amoah, J., Hsu, A. J., Herzke, C. A., Gerber, J. S., & Tamma, P. D. (2020). Comparative effectiveness of antibiotic treatment duration in children with pyelonephritis. JAMA Network Open, 3(5), e203951. 

Urinary Tract Infections - Community Onset

Patient Population:
Pediatric

See further UTI management guidelines from the UCSF Northern California Pediatric Hospital Medicine Consortium, though reference below recommendations for updated antibiotic selection.

Diagnosis is made based on: 

Pyuria (>5-10 WBC/HPF on microscopy) AND 

At least 50,000 colonies per mL of a single uropathogenic organism in an appropriately collected specimen: 

Catheterized (even if bag collection for urinalysis is used for screening, catheterization should be used to collect urine for culture) 

Clean catch  

Compatible urinary tract symptoms 

Therapy should be modified according to culture and susceptibilities.  For patients with prior UTIs, consider susceptibilities of prior causative organisms when selecting empiric therapy. See Table 1 for inferred susceptibility for enteral antibiotics from IV antibiotic susceptibilities that are routinely reported in BCH Microbiology laboratories. Consider ID/ASP consult for patients with current or recent history of multidrug resistant organisms, such as Extended-Spectrum Beta-lactamase (ESBL) producers. 

Condition Major Pathogens  First Choice Therapy Alternative Therapy Comments
Urinary tract infection < 2 months old   Enteric gram-negative bacteria 

In most cases therapy will be initiated per Fever Without a Source - Young Infant guidelines 

In infants age 28-60 days, if initial evaluation indicates UTI is likely (pyuria on urinalysis), initial oral therapy may be appropriate based on evaluating provider discretion. 

For infants initially treated with IV therapy, conversion to pathogen-directed enteral therapy is appropriate in most cases after resolution of presenting signs and symptoms of UTI. 

   

Urinary tract infection, community-onset, 2 months-12 years old 

 Includes febrile UTI in which involvement of upper vs. lower urinary tract cannot be easily distinguished 

Enteric gram- negative bacteria  Cephalexin
25 mg/kg/dose (max 500 mg/dose) enterally tid 

Penicillin or cephalosporin allergy with higher risk for allergic reaction OR history of prior UTI with cefazolin resistant, Trimethoprim-sulfamethoxazole susceptible organism

Trimethoprim-sulfamethoxazole (Bactrim) 5 mg trimethoprim/kg/ dose (max 160 mg trimethoprim/dose) enterally bid

Duration: 7 days 

Modify therapy based on culture and susceptibilities 

Note: Ceftriaxone does NOT predict cefdinir, cefixime or cefpodoxime susceptibility (See Table 1 below for inferred susceptibilities) 

Uncomplicated cystitis, > 12 years old  Enteric gram-negative bacteria  Nitrofurantoin monohydrate/ macrocrystals (Macrobid)
100 mg/dose enterally bid 
Cephalexin
25 mg/kg/dose (max 500 mg/dose) enterally bid  

Duration: 3-5 days 

Modify therapy based on culture and susceptibilities 

Pyelonephritis, community-onset, > 6 months of age   Enteric gram-negative bacteria 

Inpatient

Ceftriaxone
50 mg/kg/dose (max 1000 mg/dose) IV q24h  

------------------------ 

If candidate for enteral therapy

Cephalexin
25 mg/kg/dose (max 500 mg/dose) enterally tid  

Penicillin or cephalosporin allergy with higher risk for allergic reaction

Inpatient

Ciprofloxacin
10 mg/kg/dose (max 400 mg/dose) IV q8h 

------------------------- 

If candidate for enteral therapy

Ciprofloxacin
15 mg/kg/dose (max 500 mg/dose) enterally bid 

ID consult recommended for complicated infection, concurrent bacteremia, or inadequate response to initial therapy 

Consider Urology consult if patient has urinary tract abnormalities 

Duration:  7 days for most patients, individualized per ID consult guidance for patients with significant complications  

Transition IV to enteral once patient is able to tolerate enteral route. 

Modify therapy based on culture and susceptibilities. See Table 1 and Table 2 below. 

 

Table 1: IV to enteral inferred susceptibility
Ampicillin → amoxicillin (cannot infer susceptibility to cephalosporins) 
Ampicillin-sulbactam (Unasyn) → amoxicillin/clavulanate (Augmentin) 
Cefazolin MIC <=16 → cephalexin/cefuroxime/cefdinir (cephalexin preferred) 
Ceftazidime/Ceftriaxone → N/A (cannot infer susceptibility to 3rd generation oral cephalosporins) 
Ciprofloxacin → ciprofloxacin 
Trimethoprim-sulfamethoxazole → trimethoprim-sulfamethoxazole (Bactrim or Septra) 
Table 2: Prefered enteral antibiotics for definitive therapy 

If the patient is able to take enteral therapy and the bacteria is susceptible, recommend narrowing antimicrobial coverage (the following antibiotics are in order of preferential use top to bottom): 

1st Tier 

Amoxicillin 25 mg/kg/dose (max 500 mg/dose) enterally bid 

OR 

Cephalexin 25 mg/kg/dose (max 500 mg/dose) enterally tid  

2nd Tier 

Trimethoprim-sulfamethoxazole (Bactrim or Septra) 5 mg trimethoprim/kg/dose (max 160 mg trimethoprim/dose) enterally bid  

OR  

Nitrofurantoin monohydrate/macrocrystals (Macrobid) (only use in cystitis without pyelonephritis) 100 mg/dose enterally bid

3rd Tier                    

Amoxicillin-clavulanate (Augmentin) 25 mg amoxicillin/kg/dose (max 500 mg amoxicillin/dose) enterally bid 

Exception: ESBL-producing organism, move to 4th tier for clinically stable outpatient, otherwise contact ASP for guidance about other options.

4th Tier Ciprofloxacin 15 mg/kg/dose (max 500 mg/dose) enterally bid 

References: 

American Academy of Pediatrics Subcommittee on Urinary Tract Infection. Urinary tract infection: clinical practice guideline for the diagnosis and management of the initial UTI in febrile infants and children 2 to 24 months. Pediatrics 2011;128:595-610. 

CLSI supplement M100. Wayne, PA: Clinical and Laboratory Standards Institute; 2020. 

Fox, M. T., Amoah, J., Hsu, A. J., Herzke, C. A., Gerber, J. S., & Tamma, P. D. (2020). Comparative effectiveness of antibiotic treatment duration in children with pyelonephritis. JAMA Network Open, 3(5), e203951. 

Gupta K, et al. International clinical practice guidelines for the treatment of acute uncomplicated cystitis and pyelonephritis in women: a 2010 update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases. Clin Infect Dis 2011;52:e103-e120. 

American Academy of Pediatrics. In: Kimberlin DW, Barnett ED, Lynfield R, Sawyer MH, eds. Red Book: 2021 Report of the Committee on Infectious Diseases. 32nd ed. Elk Grove Village, IL: American Academy of Pediatrics; 2021.